Scientific writing

Methods transparency: show the decisions behind a cohort study

A methods section should let a reader understand how the study was done and identify the evidence needed to examine its claims. Fluent wording alone cannot establish reproducibility. MT24 is an invented retrospective-cohort exercise: it contains no participant records, completed analysis or scientific findings.

An open protocol folio with empty fields faces group and database symbols, an unnumbered follow-up strip and a blank table panel.
Conceptual editorial artwork made with AI assistance; it shows no research data or assessment scores.

The working sequence

  1. Name the design and population
  2. Connect definitions to records
  3. Keep unresolved decisions visible
  4. Separate reporting from reproduction
Graphical abstract

1. Choose guidance that matches the design

STROBE addresses reporting of cohort, case-control and cross-sectional studies. Its authors distinguish reporting guidance from prescriptions for study design and from an instrument for assessing study quality. Use it to find missing explanations, not to score a manuscript as scientifically valid.

For MT24, the teaching design is a retrospective cohort assembled from clinic visits. A review checklist for another design cannot substitute for explaining how this cohort was selected, what was measured and how follow-up was determined.

Reference: STROBE: aims and use

2. Replace a vague sentence with inspectable decisions

The starting sentence is: “We reviewed clinic records and analysed outcomes.” It leaves the source population, time window, unit of observation and outcome undefined. An editor cannot infer those details from the study title.

3. Give each reporting statement an evidence source

A reader needs more than a reassuring reference to “electronic records”. Identify the fields and rules that implement each definition. STROBE's cohort checklist asks authors to explain the setting, selection, variables, data sources and analytical handling. The following mapping is original guidance, not an official checklist translation.

Reference: STROBE: cohort reporting checklist

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MT24: where the proposed paragraph must be checked
DecisionEvidence requiredState in this exercise
MT24-D1: eligibilityAge field, visit window and first-visit selection ruleProposed; extraction not run
MT24-D2: outcomeReturn-visit record and definition of unplanned attendanceDefinition proposed; source mapping unverified
MT24-D3: follow-upObservation end date for each participantCompleteness unknown
MT24-D4: analysisDated analysis plan and actual implementationMethod and execution unknown

4. Do not turn missing observation into no event

A person whose follow-up record stops early is not automatically a person who had no return visit. In MT24, separate absence of a recorded outcome from evidence that the full 30-day observation window was available. Otherwise the wording may imply information the dataset does not contain.

The last eligible index visit is 30 June 2025. Under the example's calendar-date convention, a full 30-day follow-up reaches 30 July 2025. A data extract ending on 30 June cannot establish that complete window. Specify the observation boundary and seek the methods team's decision on incomplete follow-up; this example prescribes no missing-data or statistical method.

Reference: STROBE: cohort reporting checklist

5. Report four different evidence states

An adequately described procedure can remain unexecuted. A stored script may not run in another environment, and a successful run may not reproduce the reported result. Record the exact inputs, code version and environment when actual execution occurs, then compare the output with a stated target.

Restricted data can still have an explicit access procedure. Describe the restriction and who can assess an access request without promising that every reader may download participant records. An empty repository or an inaccessible link should not be called an available analysis package.

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MT24: evidence states that must not be collapsed
StateWhat would support itMT24 observation
ReportingDefinitions and procedures stated with their limitsTeaching paragraph only
AvailabilitySpecified inputs/code accessible under stated termsNot verified
ExecutionRecorded run of exact inputs and instructionsNot performed
Result comparisonActual output compared with reported targetNot performed

6. Leave the reviewer a precise unresolved question

Ask the methods reviewer to examine the specific ambiguity: whether same-clinic records capture the intended outcome, whether observation is complete, or whether the chosen analytical method fits the question. Do not replace that discussion with “STROBE compliant”. Reporting clarity helps appraisal; it does not settle the underlying scientific decision.

Before submission, reconcile the paragraph, data dictionary and analysis account. Keep amendments and departures from the plan visible. MT24 supplies no sample size, approval number or result to copy into a real manuscript. Those statements must come from the real study's records.

Questions for a practical final check

  • Is the cohort defined by explicit selection rules?
  • Can each variable be traced to its source?
  • Does follow-up extend far enough for the stated outcome?
  • Are incomplete records distinguished from no event?
  • Are description, access, execution and comparison reported separately?

Examples illustrate a working method; they do not establish the readiness of a particular journal or manuscript. This is general guidance: check the current policies of the journal concerned. Source links reviewed 15 September 2026.